Actually there was such a system.  

The American Prairies were net builders of soil.  This was a complicated ecosystem of plants and animals that produced more biomass than was consumed on a yearly basis.  This is why midwest land has so much topsoil even today.  Some researchers think Native Americans used prescribed burns to maintain this situation.  Jury still out on that one as prairie fires can start naturally.

Removing the grazing herds and tilling the soil resulted in a less efficient system, but more specific crop foods for humans in the short term.

Correct, but let's make sure nobody thinks that we've found a silver bullet. That prairie-ruminant system took a very long time to build up all that soil. Moreover, it's a delicately balanced system. If you graze slightly too little or too much (more likely) you end up with a net loss of soil. As soon as you till the soil, erosion and organic "burn-off" ramp up, and those soil reserves begin to disappear.

I do believe that one can build soil in a sustainable way (ie. not by importing feed, minerals, or chemicals). Infact, that's my goal on my (future) farm, but I don't believe for a minute that its going to be easy...or all that profitable. Lets hope I'm wrong.

The prescribed burns seems bunk to me. Organic matter is key to building soil. You don't build up soil organic matter by burning up the soul source of  organic matter. There might be something there, but I don't see it.

The burns kept trees from taking over.    

I do believe that one can build soil in a sustainable way (ie. not by importing feed, minerals, or chemicals). Infact, that's my goal on my (future) farm, but I don't believe for a minute that its going to be easy...or all that profitable. Lets hope I'm wrong.

It can be done.   www.soilfoodweb.com   The works of Albert Howard, and the Rodale institute can give you pointers.    Don't forget the rock dust.  (you can make the rock dust yourself BTW)

It'll take years, and mostlikely someone will buy your land in the future and 'suck' all the soil value back outta it, but hey, you'll be dead.

"The burns kept trees from taking over."

No they didn't. I've addressed this misconception in a comment below.

You've outlined much of the reading that has lead me to sustainable farming. Anybody else who would like to start, or transition, to sustainable farming would be well-advised to check out some of this material. ATTRA (http://attra.org) is also a good source of information.

People might like to read up on slash-and-burn farming. People in the Amazon Basin have been practicing this method for thousands of years. It's a quick way to clear a field and returns nutrients from the plant matter faster than if left to rot naturally.

The problem? Nutrients in tropical soils are scarce. The input from burning doesn't last long and the farmer must clear another section of forest (every three years or so if I remember my class notes correctly). Since the forest takes longer to recover than three years, each farmer needs a significant amount of fallow land. The method still works well as long as population density is very low and the farmer is willing to sustain back-breaking amounts of labour.

I think it's accepted that Native Americans burned the plains, which prevented tree encroachment and recycled nutrients into the soil. If you go into a prescribed burn area a year or two following a burn, the growth is incredibly lush. But the burn was not every year, and much organic matter produced by plants is grown within the soil, not on top, as roots, tubers, rhizomes, etc., and obviously remains there after a burn. Legumes fix nitrogen in nodules on the roots, and after tops are removed, the n-fixing roots/nodules remain.

I greatly appreciate the post. I have an MS in Plant Science and have been baffled by the claims made by switchgrass adherents.  

"I think it's accepted that Native Americans burned the plains, which prevented tree encroachment and recycled nutrients into the soil."

My understanding is that this is not the case. A dozen years ago, I made a similar statement in an ecology class and the professor thought that the issue was important enough to ignore his planned material and spent half-an-hour raking me over the coals. The natives did burns, but their population was too small to have much of an impact. Lightning was by far the bigger contributer, but even so, burns aren't a long-term advantage. You would have seen a similar impact after grazing by sheep or goats as you did after the prescribed burn. In the long-term grazing is the better option.

Infact, ruminants and climate are what made the natural prairies. Lack of water favours grasses over trees. It's only in artificial prairies claimed from forest (ie. my farm) where one has to make an effort to keep the trees from taking the land back. But this effort is better made with livestock or a "brush-hog" than with fire. Rather than recycling nutrients into the soil, burning gassifies most of the nitrogen and potassium that would otherwise be incorporated into the soil. Enlightened farmers don't burn anything that they don't have to.

Here's the first link that "burning organic matter fertility" yielded on Google:

http://www.new-agri.co.uk/00-1/pov.html

The right type of burn may be able to build up your soil:
http://www.sciencedaily.com/releases/2006/03/060301090431.htm
That was an interesting article.

Basically, rather than burning, they are advocating charring crop residues which leaves much (well, half) of the carbon. My gut tells me (warning: WAG ahead) that it would probably be more effective, and safer (less risk of starting an uncontrolled fire), to just leave the residue in place or let livestock clean it up. Letting a ruminant get much of it's diet from crop residue seems most attractive to me, but letting residue remain as a moisture conserving mulch makes a lot of sense too.

It would be interesting to see the approach in the article compared to the alternatives. Rather than just holding up an orange and saying, "Lood at this nice orange," we could compare it to the other oranges and apples.

Prairies burn in a "non-efficient" way - they leave a lot of unburned biomass in the form of charcoal.  And charcoal holds onto soil nutrients like crazy - that's why it is so often used as a filter.  Thus although burning the prairies does fritter away some organic matter, it makes the remaining soil build up other essential nutrients.